Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EGC75889.1Hypothetical protein. (134 aa)    
Predicted Functional Partners:
EGC75890.1
Hypothetical protein.
 
  
 0.991
EGC74587.1
Hypothetical protein.
 
    0.661
EGC75144.1
Hypothetical protein.
  
   
 0.636
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.631
EGC74790.1
Hypothetical protein.
 
     0.607
EGC75912.1
Hypothetical protein.
 
    0.599
EGC75968.1
Hypothetical protein.
 
    0.532
EGC74828.1
Hypothetical protein; Belongs to the UPF0297 family.
  
    0.485
EGC75891.1
Hypothetical protein.
       0.460
EGC75897.1
Hypothetical protein.
 
     0.458
Your Current Organism:
Lachnospiraceae bacterium 6137FAA
NCBI taxonomy Id: 658656
Other names: L. bacterium 6_1_37FAA, Lachnospiraceae bacterium 6_1_37FAA
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