Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EGC75898.1Hypothetical protein. (317 aa)    
Predicted Functional Partners:
EGC75373.1
Hypothetical protein.
 
   
 0.843
EGC74874.1
Stage IV sporulation protein A.
  
   
 0.821
EGC73428.1
Sporulation protein YabP.
  
   
 0.817
EGC75153.1
Stage III sporulation protein AA.
  
   
 0.798
EGC75374.1
Hypothetical protein.
 
   
 0.793
EGC75150.1
Hypothetical protein.
  
   
 0.786
EGC73474.1
Hypothetical protein.
 
  
 0.782
EGC74215.1
Sporulation transcriptional regulator SpoIIID.
  
  
 0.779
EGC75149.1
Hypothetical protein.
  
    0.777
EGC73818.1
Hypothetical protein.
  
   
 0.775
Your Current Organism:
Lachnospiraceae bacterium 6137FAA
NCBI taxonomy Id: 658656
Other names: L. bacterium 6_1_37FAA, Lachnospiraceae bacterium 6_1_37FAA
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