Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EGC75147.1Hypothetical protein. (183 aa)    
Predicted Functional Partners:
EGC75146.1
Hypothetical protein.
 
  
 0.997
EGC75149.1
Hypothetical protein.
 
  
 0.981
EGC75153.1
Stage III sporulation protein AA.
 
  
 0.975
EGC75148.1
Hypothetical protein.
  
  
 0.973
EGC75152.1
Hypothetical protein.
 
  
 0.964
EGC75150.1
Hypothetical protein.
 
  
 0.960
EGC75151.1
Stage III sporulation protein AC.
 
  
 0.942
EGC74215.1
Sporulation transcriptional regulator SpoIIID.
  
  
 0.831
EGC74874.1
Stage IV sporulation protein A.
  
  
 0.829
EGC75167.1
Hypothetical protein.
 
  
 0.826
Your Current Organism:
Lachnospiraceae bacterium 6137FAA
NCBI taxonomy Id: 658656
Other names: L. bacterium 6_1_37FAA, Lachnospiraceae bacterium 6_1_37FAA
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