Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EGC75128.1Hypothetical protein. (383 aa)    
Predicted Functional Partners:
EGC75939.1
FeS cluster assembly scaffold protein NifU.
 
 0.970
EGC75714.1
Hypothetical protein.
  
 0.908
thiI
tRNA sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
 0.878
EGC76130.1
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
   
 0.850
EGC75130.1
DNA sulfur modification protein DndD.
 
     0.848
EGC75131.1
Sulfurtransferase DndC.
 
  
 0.847
EGC75129.1
DNA sulfur modification protein DndE.
 
   
 0.842
EGC75132.1
DNA sulfur modification protein DndB.
 
   
 0.817
EGC74724.1
Hypothetical protein.
   
 0.807
EGC73763.1
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
   
 0.782
Your Current Organism:
Lachnospiraceae bacterium 6137FAA
NCBI taxonomy Id: 658656
Other names: L. bacterium 6_1_37FAA, Lachnospiraceae bacterium 6_1_37FAA
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