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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGC74387.1Hypothetical protein. (379 aa)    
Predicted Functional Partners:
EGC74386.1
Hypothetical protein.
 
   
 0.939
EGC74384.1
Hypothetical protein.
 
     0.930
EGC74385.1
Hypothetical protein.
 
   
 0.840
EGC73869.1
Hypothetical protein.
 
  
  0.569
EGC73971.1
Hypothetical protein.
  
  
  0.527
EGC73787.1
Hypothetical protein; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.505
EGC73499.1
Hypothetical protein.
  
  
  0.477
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 
 0.450
EGC75915.1
Hypothetical protein.
 
  
  0.444
EGC75922.1
Hypothetical protein.
 
  
  0.444
Your Current Organism:
Lachnospiraceae bacterium 6137FAA
NCBI taxonomy Id: 658656
Other names: L. bacterium 6_1_37FAA, Lachnospiraceae bacterium 6_1_37FAA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.