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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGC74034.1Hypothetical protein. (289 aa)    
Predicted Functional Partners:
EGC75939.1
FeS cluster assembly scaffold protein NifU.
 
 0.958
EGC76130.1
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
   
 0.908
thiI
tRNA sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
 0.885
EGC75714.1
Hypothetical protein.
  
 0.878
EGC74035.1
Hypothetical protein.
 
   
 0.844
EGC74037.1
Sulfurtransferase DndC.
 
  
 0.844
EGC74036.1
Hypothetical protein.
 
     0.840
EGC74724.1
Hypothetical protein.
   
 0.828
EGC74038.1
DNA sulfur modification protein DndB.
 
   
 0.826
EGC73763.1
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
   
 0.788
Your Current Organism:
Lachnospiraceae bacterium 6137FAA
NCBI taxonomy Id: 658656
Other names: L. bacterium 6_1_37FAA, Lachnospiraceae bacterium 6_1_37FAA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.