EGC73429.1 protein (Lachnospiraceae bacterium 6137FAA)

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second shell of interactors

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Predicted Interactions

gene neighborhood

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textmining

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Score

EGC73429.1

Hypothetical protein. (79 aa)

Predicted Functional Partners:

rplS

0.960

rplQ

0.946

rpmB

0.941

rpmH

0.939

rplN

0.938

rplT

0.937

rplV

0.937

rplM

0.937

rpmF

0.936

rpmA

0.936

Your Current Organism:

Lachnospiraceae bacterium 6137FAA

NCBI taxonomy Id: 658656
Other names: L. bacterium 6_1_37FAA, Lachnospiraceae bacterium 6_1_37FAA

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGC73429.1	rplM	HMPREF0490_02848	HMPREF0490_02763	Hypothetical protein.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.937
EGC73429.1	rplN	HMPREF0490_02848	HMPREF0490_02242	Hypothetical protein.	50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.938
EGC73429.1	rplQ	HMPREF0490_02848	HMPREF0490_02223	Hypothetical protein.	50S ribosomal protein L17.	0.946
EGC73429.1	rplS	HMPREF0490_02848	HMPREF0490_00468	Hypothetical protein.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.960
EGC73429.1	rplT	HMPREF0490_02848	HMPREF0490_01474	Hypothetical protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.937
EGC73429.1	rplV	HMPREF0490_02848	HMPREF0490_02247	Hypothetical protein.	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.937
EGC73429.1	rpmA	HMPREF0490_02848	HMPREF0490_01007	Hypothetical protein.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.936
EGC73429.1	rpmB	HMPREF0490_02848	HMPREF0490_00530	Hypothetical protein.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.941
EGC73429.1	rpmF	HMPREF0490_02848	HMPREF0490_00616	Hypothetical protein.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.936
EGC73429.1	rpmH	HMPREF0490_02848	HMPREF0490_02573	Hypothetical protein.	50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.939
rplM	EGC73429.1	HMPREF0490_02763	HMPREF0490_02848	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Hypothetical protein.	0.937
rplM	rplN	HMPREF0490_02763	HMPREF0490_02242	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
rplM	rplQ	HMPREF0490_02763	HMPREF0490_02223	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L17.	0.998
rplM	rplS	HMPREF0490_02763	HMPREF0490_00468	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.999
rplM	rplT	HMPREF0490_02763	HMPREF0490_01474	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplM	rplV	HMPREF0490_02763	HMPREF0490_02247	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplM	rpmA	HMPREF0490_02763	HMPREF0490_01007	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplM	rpmB	HMPREF0490_02763	HMPREF0490_00530	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.998
rplM	rpmF	HMPREF0490_02763	HMPREF0490_00616	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.997
rplM	rpmH	HMPREF0490_02763	HMPREF0490_02573	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.996