Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFP63374.1Haloacid dehalogenase-like hydrolase. (388 aa)    
Predicted Functional Partners:
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 0.727
EFP61519.1
PTS system, glucose-like IIB component.
    
 0.708
EFP60853.1
Phosphotransferase system, EIIC.
    
 0.708
ptbA-4
PTS system, glucose subfamily, IIA component.
    
 0.708
EFP60112.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; PTS system sucrose-specific EIIBCA component (EIIBCA-Scr) (EII-Scr).
    
 0.708
EFP60114.1
Phosphotransferase system, EIIC; PTS system beta-glucoside-specific EIIBCA component (EIIBCA-Bgl) (EII-Bgl).
    
 0.708
EFP61461.1
Phosphoribulokinase/uridine kinase family protein.
  
 
  0.686
ribA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.685
ribA-2
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.685
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
 0.674
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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