Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP63133.1PTS system fructose IIA component. (133 aa)    
Predicted Functional Partners:
EFP63134.1
PTS system mannose/fructose/sorbose family IID component.
  
 0.934
EFP63135.1
PTS system sorbose-specific iic component.
  
 0.932
EFP63136.1
PTS system sorbose subfamily IIB component.
  
 
 0.910
EFP61522.1
PTS system sorbose-specific iic component.
 
 0.904
EFP61521.1
PTS system, mannose/fructose/sorbose family, IID component.
 
 0.894
EFP60043.1
PTS system fructose IIA component.
 
 
 0.875
EFP60038.1
PTS system fructose IIA component.
  
  
  0.870
EFP63130.1
PTS system sorbose subfamily IIB component.
  
 
 0.857
EFP61523.1
PTS system, mannose/fructose/sorbose family, IIB component.
 
 
0.836
EFP59691.1
PTS system sorbose-specific iic component.
 
 0.823
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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