Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFP62902.1Transcriptional regulator, GntR family. (123 aa)    
Predicted Functional Partners:
EFP62897.1
ABC transporter, ATP-binding protein.
 
  
 0.794
EFP62044.1
Hypothetical protein.
  
  
 0.710
EFP62047.1
ABC transporter, ATP-binding protein.
 
  
 0.706
EFP62147.1
ABC transporter, ATP-binding protein.
 
  
 0.695
EFP62901.1
Hypothetical protein.
       0.620
EFP60004.1
ABC transporter, ATP-binding protein.
 
  
 0.608
EFP61898.1
Hypothetical protein.
   
    0.555
EFP62903.1
Hypothetical protein.
       0.542
EFP60151.1
ABC transporter, ATP-binding protein.
 
  
 0.530
EFP61776.1
ABC transporter, ATP-binding protein.
 
  
 0.513
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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