Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spoIVAStage IV sporulation protein A. (492 aa)    
Predicted Functional Partners:
spoIID
Stage II sporulation protein D.
  
  
 0.912
EFP59903.1
Peptidase, M23 family.
  
  
 0.868
spoIIP
Stage II sporulation protein P.
 
   
 0.850
EFP62229.1
Putative anti-sigma F factor.
  
  
 0.840
EFP59962.1
RNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.831
EFP59870.1
Putative stage II sporulation protein E.
  
   
 0.827
EFP62230.1
Putative anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
   
 0.817
EFP60061.1
Putative stage V sporulation protein T.
  
  
 0.807
EFP62395.1
Putative stage V sporulation protein AC.
  
   
 0.802
gpr
GPR endopeptidase.
  
   
 0.802
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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