Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP62120.1Polysaccharide deacetylase. (439 aa)    
Predicted Functional Partners:
EFP61465.1
Kinase domain protein.
 
 
 0.690
EFP60368.1
Glycosyltransferase, group 2 family protein.
 
 
 0.690
EFP61489.1
Hypothetical protein.
 
  
 0.688
EFP62636.1
Hypothetical protein.
    
 0.686
EFP61269.1
Hypothetical protein.
 
  
 0.686
EFP62981.1
Collagen triple helix repeat protein.
    
 0.669
EFP62240.1
Hypothetical protein.
    
 0.667
EFP60367.1
Hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (Polyglycerol phosphate polymerase) (CGPTase) (Majorteichoic acid biosynthesis protein F).
  
 
 0.645
EFP60365.1
Glycosyltransferase, group 2 family protein.
  
 
 0.644
EFP62930.1
Glycosyltransferase, group 2 family protein.
  
 
 0.642
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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