Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP61794.1Hypothetical protein. (119 aa)    
Predicted Functional Partners:
EFP59917.1
Transcriptional regulator, MarR family.
 
     0.596
EFP60025.1
Diguanylate cyclase (GGDEF) domain protein.
  
     0.590
EFP60879.1
Transcriptional regulator, MarR family.
 
     0.493
EFP61793.1
Hypothetical protein.
       0.480
EFP60171.1
Hypothetical protein.
  
     0.453
EFP61033.1
Hypothetical protein.
  
     0.446
EFP63269.1
Hypothetical protein.
  
     0.412
EFP61457.1
Transcriptional regulator, GntR family.
  
     0.410
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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