Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFP61608.1Transcriptional regulator, LuxR family. (841 aa)    
Predicted Functional Partners:
EFP61610.1
ABC-2 type transporter.
 
     0.904
EFP62995.1
Response regulator receiver domain protein.
 
  
 0.802
EFP61025.1
Response regulator receiver domain protein.
 
  
 0.801
EFP61023.1
Response regulator receiver domain protein.
 
  
 0.793
EFP62568.1
Response regulator receiver domain protein.
 
  
 0.773
EFP61611.1
ABC transporter, ATP-binding protein.
 
     0.756
EFP62790.1
Hypothetical protein.
    
 0.701
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
    
  0.679
guaA-2
GMP synthase (glutamine-hydrolyzing) domain protein.
    
  0.679
EFP61609.1
ABC-2 type transporter.
       0.676
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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