Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFP61065.1ABC1 family protein. (532 aa)    
Predicted Functional Partners:
EFP61066.1
Hypothetical protein.
 
     0.951
EFP60983.1
HAD hydrolase, family IA, variant 1.
  
    0.790
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
    
 0.728
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
 
 0.703
hemL
Glutamate-1-semialdehyde-2,1-aminomutase.
  
 
  0.697
EFP62565.1
Ribosomal protein L7Ae.
    
  0.694
EFP62632.1
Hypothetical protein.
  
 
 0.679
EFP62634.1
Hypothetical protein.
  
 
 0.679
EFP60366.1
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase.
  
 
 0.679
EFP60300.1
Glycosyltransferase, group 1 family protein.
  
 
 0.679
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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