Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
mreCRod shape-determining protein MreC; Involved in formation and maintenance of cell shape. (278 aa)    
Predicted Functional Partners:
EFP61076.1
Putative rod shape-determining protein MreD.
 
 
 0.990
EFP61077.1
Hypothetical protein.
  
  
 0.973
EFP59904.1
Cell shape determining protein, MreB/Mrl family.
 
 
 0.972
mbl
Mbl protein.
 
 
 0.963
minD
Septum site-determining protein MinD.
  
    0.959
radC
DNA repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.943
EFP62351.1
Penicillin-binding protein, transpeptidase domain protein.
 
 
 0.916
pbpB
Penicillin-binding protein 2B.
 
 
 0.833
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.813
EFP60931.1
CamS sex pheromone family protein.
  
    0.785
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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