Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP60849.1PHP domain protein. (295 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase.
    
  0.867
EFP60848.1
Hypothetical protein.
    
  0.864
EFP61519.1
PTS system, glucose-like IIB component.
    
  0.697
EFP60853.1
Phosphotransferase system, EIIC.
    
  0.697
ptbA-4
PTS system, glucose subfamily, IIA component.
    
  0.697
EFP60112.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; PTS system sucrose-specific EIIBCA component (EIIBCA-Scr) (EII-Scr).
    
  0.697
EFP60114.1
Phosphotransferase system, EIIC; PTS system beta-glucoside-specific EIIBCA component (EIIBCA-Bgl) (EII-Bgl).
    
  0.697
phnJ
Phosphonate metabolism protein PhnJ.
    
  0.679
EFP63000.1
Hypothetical protein.
    
  0.678
EFP63003.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
    
  0.678
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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