Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP60706.1Hypothetical protein. (127 aa)    
Predicted Functional Partners:
EFP60705.1
Hypothetical protein.
 
     0.941
EFP60708.1
FtsK/SpoIIIE family protein.
 
  
 0.894
EFP62529.1
DNA-binding helix-turn-helix protein.
 
  
 0.876
EFP59788.1
DNA-binding helix-turn-helix protein.
 
  
 0.876
EFP59856.1
DNA-binding helix-turn-helix protein; Unextendable partial coding region.
 
  
 0.844
EFP62530.1
FtsK/SpoIIIE family protein.
 
  
 0.833
EFP59854.1
FtsK/SpoIIIE family protein.
 
  
 0.833
EFP62520.1
Hypothetical protein.
 
    0.814
EFP61138.1
DNA-binding helix-turn-helix protein.
 
  
 0.796
EFP59778.1
Hypothetical protein.
 
    0.796
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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