Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP60597.1Hypothetical protein. (272 aa)    
Predicted Functional Partners:
EFP61465.1
Kinase domain protein.
   
 
 0.937
EFP60598.1
Hypothetical protein.
    
  0.903
pbpB
Penicillin-binding protein 2B.
   
 0.886
EFP63095.1
Diguanylate cyclase (GGDEF) domain protein.
  
 
 0.869
EFP60939.1
Diguanylate cyclase (GGDEF) domain protein.
  
 
 0.869
EFP60648.1
Diguanylate cyclase (GGDEF) domain protein.
  
 
 0.869
EFP60617.1
Hypothetical protein.
  
 
 0.869
EFP59632.1
Diguanylate cyclase (GGDEF) domain protein.
  
 
 0.869
EFP61858.1
Hypothetical protein.
  
 
 0.862
EFP60268.1
Tetratricopeptide repeat protein.
  
 0.856
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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