Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP60603.1Hypothetical protein. (490 aa)    
Predicted Functional Partners:
EFP60604.1
Hypothetical protein.
 
     0.906
EFP63203.1
Diguanylate cyclase (GGDEF) domain protein.
   
 0.841
EFP60607.1
Hypothetical protein.
 
   
 0.834
EFP63397.1
DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.
  
 0.799
EFP61294.1
DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.
  
 0.799
EFP62129.1
Ankyrin repeat protein.
   
 0.785
EFP60608.1
Bacterial type II secretion system domain protein F.
 
   
 0.778
EFP61061.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
   
 0.775
EFP61210.1
Diguanylate cyclase (GGDEF) domain protein.
    
 0.773
EFP60442.1
Methyl-accepting chemotaxis protein signaling domain protein.
   
 0.758
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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