STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFP60586.1UbiC transcription regulator-associated domain protein. (243 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase.
    
 0.895
EFP60587.1
Hypothetical protein.
 
     0.821
EFP60588.1
Hypothetical protein.
       0.774
EFP61022.1
Transcriptional regulator, GntR family.
  
     0.771
EFP61349.1
UbiC transcription regulator-associated domain protein.
  
     0.764
EFP60585.1
Oxidoreductase, short chain dehydrogenase/reductase family protein.
       0.715
EFP60457.1
Amidohydrolase family protein.
 
 
 0.715
EFP60584.1
PTS system sorbose subfamily IIB component.
 
    0.705
EFP62825.1
Transcriptional regulator, AraC family.
  
  
 0.694
EFP59686.1
Transcriptional regulator, AraC family.
  
  
 0.694
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.