Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP60587.1Hypothetical protein. (159 aa)    
Predicted Functional Partners:
EFP60588.1
Hypothetical protein.
      0.925
EFP60586.1
UbiC transcription regulator-associated domain protein.
 
     0.819
EFP60582.1
PTS system mannose/fructose/sorbose family IID component.
 
     0.800
EFP60585.1
Oxidoreductase, short chain dehydrogenase/reductase family protein.
 
     0.779
EFP60584.1
PTS system sorbose subfamily IIB component.
 
     0.747
EFP60583.1
PTS system fructose IIA component.
 
     0.689
EFP63015.1
PTS system, Lactose/Cellobiose specific IIB subunit; Overlaps another CDS with the same product name.
 
     0.552
EFP60480.1
Hypothetical protein.
  
     0.522
EFP60077.1
PRD domain protein.
 
     0.475
EFP63011.1
PRD domain protein.
 
     0.473
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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