Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFP60554.1ABC transporter, substrate-binding protein, QAT family. (515 aa)    
Predicted Functional Partners:
proV
Glycine betaine/L-proline transport ATP binding subunit.
 
 0.999
EFP60553.1
ABC transporter, ATP-binding protein.
 
 0.999
EFP61702.1
ABC transporter, substrate-binding protein, QAT family.
 
 
0.995
EFP60315.1
ABC transporter, permease protein.
    
 0.972
EFP60598.1
Hypothetical protein.
  
 
 0.966
phnD
Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein.
    
 0.956
EFP60537.1
Hypothetical protein.
  
 
 0.954
EFP59802.1
ABC transporter, substrate-binding protein, family 5.
  
 
 0.953
EFP60442.1
Methyl-accepting chemotaxis protein signaling domain protein.
   
 
 0.950
EFP62096.1
ABC transporter, permease protein.
    
 0.947
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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