Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFP60557.1Transcriptional regulator. (150 aa)    
Predicted Functional Partners:
EFP62331.1
Aminotransferase, class V.
  
 
 0.893
EFP60558.1
Rhodanese-like protein.
  
  
 0.822
EFP60556.1
Putative thioredoxin; Belongs to the thioredoxin family.
     
 0.808
trxB
Thioredoxin-disulfide reductase.
     
 0.784
EFP62494.1
[2Fe-2S]-binding domain protein.
  
  
 0.719
EFP62065.1
Transcriptional regulator, Spx/MgsR family; Belongs to the ArsC family.
  
  
 0.695
EFP60554.1
ABC transporter, substrate-binding protein, QAT family.
     
 0.676
EFP63059.1
Hypothetical protein.
  
  
 0.647
EFP62243.1
SUF system FeS assembly protein, NifU family.
  
  
 0.647
EFP60553.1
ABC transporter, ATP-binding protein.
       0.618
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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