Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFP60558.1Rhodanese-like protein. (140 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
 0.846
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
  0.843
EFP62349.1
Metallo-beta-lactamase domain protein.
  
 0.842
EFP60571.1
Metallo-beta-lactamase domain protein.
  
 0.842
EFP59749.1
Metallo-beta-lactamase domain protein.
  
 0.842
EFP62331.1
Aminotransferase, class V.
   
 0.826
EFP60557.1
Transcriptional regulator.
  
  
 0.822
EFP61722.1
Putative esterase.
  
 0.819
EFP61297.1
Metallo-beta-lactamase domain protein.
  
 0.818
EFP61312.1
Metallo-beta-lactamase domain protein.
  
 0.818
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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