Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
EFP60468.1ABC transporter, ATP-binding protein. (253 aa)    
Predicted Functional Partners:
EFP60469.1
Efflux ABC transporter, permease protein.
 
 0.992
EFP61266.1
Efflux ABC transporter, permease protein.
 
 0.981
EFP60013.1
Efflux ABC transporter, permease protein.
 
 0.969
EFP61541.1
Efflux ABC transporter, permease protein.
 
 0.870
EFP60466.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
 
   
 0.854
EFP61943.1
Efflux ABC transporter, permease protein.
  
 0.845
EFP61944.1
Adhesin lipoprotein.
  
 0.845
EFP60816.1
ABC transporter, ATP-binding protein.
 
0.836
EFP61530.1
ABC transporter, ATP-binding protein.
  
 0.825
EFP61317.1
Efflux ABC transporter, permease protein.
  
 0.825
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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