Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP60353.1Hypothetical protein. (107 aa)    
Predicted Functional Partners:
EFP60354.1
Hypothetical protein.
       0.773
EFP60355.1
Hypothetical protein.
       0.773
EFP60352.1
Hypothetical protein.
       0.578
EFP60351.1
Hypothetical protein.
       0.549
EFP60356.1
Hypothetical protein.
       0.503
EFP60350.1
Hypothetical protein.
       0.448
EFP60348.1
Putative orphan protein could be an antifreeze protein.
       0.445
EFP60349.1
Hypothetical protein.
       0.445
EFP60345.1
Hypothetical protein.
       0.437
EFP60346.1
Hypothetical protein.
       0.437
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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