Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP60404.1Hypothetical protein. (71 aa)    
Predicted Functional Partners:
EFP60405.1
Plasmid recombination enzyme.
 
     0.950
EFP60403.1
Resolvase, N-terminal domain protein.
 
     0.897
EFP60219.1
Putative plasmid recombination enzyme.
 
     0.790
EFP63416.1
Plasmid recombination enzyme.
 
     0.789
EFP60218.1
Hypothetical protein.
 
     0.787
repA
Replication initiator protein A domain protein.
 
     0.773
EFP63338.1
DNA-binding helix-turn-helix protein.
  
     0.769
EFP60216.1
DNA-binding helix-turn-helix protein.
  
     0.769
EFP59919.1
DNA-binding helix-turn-helix protein.
 
     0.598
EFP60999.1
Hypothetical protein.
  
     0.471
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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