Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP60288.1Diguanylate cyclase (GGDEF) domain protein. (696 aa)    
Predicted Functional Partners:
EFP63203.1
Diguanylate cyclase (GGDEF) domain protein.
 
 0.996
EFP61210.1
Diguanylate cyclase (GGDEF) domain protein.
 
 0.987
EFP60648.1
Diguanylate cyclase (GGDEF) domain protein.
 0.985
EFP59632.1
Diguanylate cyclase (GGDEF) domain protein.
 
 0.985
EFP63095.1
Diguanylate cyclase (GGDEF) domain protein.
 
 0.984
EFP60939.1
Diguanylate cyclase (GGDEF) domain protein.
 
 0.984
EFP62683.1
Diguanylate cyclase (GGDEF) domain protein.
 
 0.977
EFP61663.1
Diguanylate cyclase (GGDEF) domain protein.
 0.973
EFP60902.1
Hypothetical protein.
 
 0.969
EFP60616.1
Diguanylate cyclase (GGDEF) domain protein.
 
 0.969
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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