Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP60305.1Hypothetical protein. (881 aa)    
Predicted Functional Partners:
EFP60304.1
Hypothetical protein.
 
    
0.826
nifJ
Pyruvate synthase.
   
 
 0.755
EFP61162.1
Bacterial group 2 Ig-like protein.
 
  
 0.733
EFP60211.1
Hypothetical protein.
 
 
 0.712
EFP60268.1
Tetratricopeptide repeat protein.
  
 0.707
EFP60173.1
Bacterial group 2 Ig-like protein.
 
  
 0.693
EFP60948.1
Hypothetical protein.
  
  
  0.684
EFP61858.1
Hypothetical protein.
  
 
 0.680
EFP61387.1
Trypsin.
  
 
 0.679
EFP61283.1
Trypsin.
  
 
 0.679
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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