Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFP60316.1ABC transporter, substrate-binding protein, family 3. (277 aa)    
Predicted Functional Partners:
EFP61639.1
ABC transporter, permease protein.
 0.999
EFP60314.1
ABC transporter, ATP-binding protein.
 
 0.999
EFP60315.1
ABC transporter, permease protein.
 0.999
EFP60667.1
ABC transporter, permease protein.
 0.997
EFP61638.1
ABC transporter, ATP-binding protein.
 
 0.971
EFP60668.1
ABC transporter, ATP-binding protein.
 
 0.949
EFP63203.1
Diguanylate cyclase (GGDEF) domain protein.
   
 0.923
EFP61702.1
ABC transporter, substrate-binding protein, QAT family.
    
 0.886
EFP60554.1
ABC transporter, substrate-binding protein, QAT family.
    
 0.886
argG
Argininosuccinate synthase; Unextendable partial coding region.
  
  
 0.864
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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