Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP60255.1Transporter, major facilitator family protein. (410 aa)    
Predicted Functional Partners:
EFP60254.1
Transcriptional regulator, ArsR family.
     
 0.776
EFP62890.1
Putative chorismate mutase.
  
 
 0.745
EFP62891.1
Prephenate dehydratase.
  
 
 0.745
EFP60952.1
Homocysteine S-methyltransferase; FUSION: methionine sintase I (cobalamin dependent) and.
  
 
 0.707
EFP59656.1
Transporter, major facilitator family protein.
  
 
 0.697
EFP62088.1
Acyltransferase.
    
 0.679
EFP62617.1
Putative L-serine ammonia-lyase.
  
 
 0.678
EFP61649.1
Beta-eliminating lyase.
    
 0.674
EFP59752.1
Homoserine dehydrogenase.
  
  0.674
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
  
 
  0.672
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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