Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP60233.1Hypothetical protein. (492 aa)    
Predicted Functional Partners:
EFP62892.1
Aminotransferase, class I/II.
  
 0.806
EFP63124.1
Amino acid kinase family; Aspartokinase 1 (Aspartokinase I) (Aspartate kinase 1).
  
 
 0.771
EFP59751.1
Amino acid kinase family; Belongs to the aspartokinase family.
  
 
 0.771
EFP61719.1
ATP-grasp domain protein.
 
 
 0.759
EFP60256.1
Hypothetical protein.
 
 
 0.758
EFP59752.1
Homoserine dehydrogenase.
  
 
 0.738
ilvB
Acetolactate synthase, large subunit, biosynthetic type.
  
 
 0.705
asnA
Aspartate--ammonia ligase.
   
 
 0.700
argG
Argininosuccinate synthase; Unextendable partial coding region.
   
 
 0.695
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis.
  
 
 0.692
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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