Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFP60173.1Bacterial group 2 Ig-like protein. (463 aa)    
Predicted Functional Partners:
pulA
Pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.745
glgD
Glucose-1-phosphate adenylyltransferase, GlgD subunit.
  
 
  0.744
EFP62981.1
Collagen triple helix repeat protein.
    
 0.716
EFP62636.1
Hypothetical protein.
    
 0.712
malQ
4-alpha-glucanotransferase.
    
 0.712
EFP61200.1
Hypothetical protein.
  
 
 0.698
EFP60329.1
Sugar-binding domain protein.
 
 
 0.698
EFP62240.1
Hypothetical protein.
    
 0.695
EFP60305.1
Hypothetical protein.
 
  
 0.693
treC
Alpha,alpha-phosphotrehalase.
  
 
 0.689
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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