Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFP59663.1Integrase core domain protein. (147 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase.
    
  0.835
EFP63407.1
Aldose 1-epimerase.
     
  0.522
EFP63195.1
HAD hydrolase, TIGR02254 family.
    
  0.492
EFP62776.1
HAD hydrolase, family IA, variant 1.
    
  0.492
EFP61435.1
HAD hydrolase, family IA, variant 3.
    
  0.492
EFP61656.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
    
  0.444
EFP61650.1
CoA transferase; Belongs to the 3-oxoacid CoA-transferase family.
     
  0.433
EFP59685.1
CoA transferase; Belongs to the 3-oxoacid CoA-transferase family.
     
  0.433
EFP59597.1
Hypothetical protein.
 
  
 0.418
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
    
  0.405
Your Current Organism:
Erysipelotrichaceae bacterium 3153
NCBI taxonomy Id: 658659
Other names: E. bacterium 3_1_53, Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichaceae bacterium str. 3_1_53, Erysipelotrichaceae bacterium strain 3_1_53
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