STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KMZ55890.1Hypothetical protein. (164 aa)    
Predicted Functional Partners:
KMZ55889.1
Hypothetical protein.
 
     0.955
KMZ55892.1
Hypothetical protein.
 
     0.936
KMZ55891.1
Alginate O-acetyltransferase AlgI; Belongs to the membrane-bound acyltransferase family.
 
     0.818
KMZ55893.1
Ribosomal large subunit pseudouridine synthase F (rRNA-uridine isomerase F) (rRNA pseudouridylate synthase F); Belongs to the pseudouridine synthase RsuA family.
       0.723
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.723
KMZ54627.1
TPR domain protein.
  
     0.686
KMZ53212.1
Hypothetical protein.
  
     0.670
KMZ55895.1
ATP-dependent Clp protease, ATP-binding subunit ClpX.
       0.666
KMZ55896.1
Sodium/hydrogen exchanger family protein.
       0.666
KMZ53213.1
Hypothetical protein.
  
     0.643
Your Current Organism:
Dorea sp. D27
NCBI taxonomy Id: 658665
Other names: D. sp. D27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.