STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KMZ55899.1Putative lipoprotein signal peptidase. (161 aa)    
Predicted Functional Partners:
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
  
  0.920
KMZ55897.1
Putative protease CspA.
 
   
 0.835
KMZ55898.1
Hypothetical protein.
       0.784
KMZ55900.1
Ion channel superfamily.
       0.727
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
 
   
 0.691
KMZ52499.1
Hypothetical protein.
  
     0.668
KMZ53575.1
Hypothetical protein.
  
     0.661
KMZ55020.1
Hypothetical protein.
  
     0.654
KMZ54906.1
Hypothetical protein.
  
     0.646
KMZ55895.1
ATP-dependent Clp protease, ATP-binding subunit ClpX.
     
 0.642
Your Current Organism:
Dorea sp. D27
NCBI taxonomy Id: 658665
Other names: D. sp. D27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.