STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KMZ55454.1Collagen protein. (314 aa)    
Predicted Functional Partners:
KMZ54872.1
Putative Rhs family protein.
  
 0.855
KMZ55431.1
Hypothetical protein.
    
 0.801
KMZ52776.1
Hypothetical protein.
  
 0.624
KMZ55447.1
dTMP kinase.
   
   0.564
KMZ53279.1
Putative endolysin.
    
 0.554
KMZ52318.1
Chitinase, class I.
    
 0.554
KMZ55897.1
Putative protease CspA.
  
 0.541
KMZ52699.1
Protease CspB; Belongs to the peptidase S8 family.
  
 0.541
KMZ52326.1
BclA protein.
 
    
0.515
KMZ52337.1
Phage major tail protein, TP901-1 family.
  
 
   0.510
Your Current Organism:
Dorea sp. D27
NCBI taxonomy Id: 658665
Other names: D. sp. D27
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