Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KMZ52763.1 | KMZ53071.1 | HMPREF0980_03206 | HMPREF0980_02936 | ATP-dependent DNA helicase RecQ. | Hypothetical protein. | 0.803 |
KMZ52763.1 | KMZ53076.1 | HMPREF0980_03206 | HMPREF0980_02941 | ATP-dependent DNA helicase RecQ. | DNA sulfur modification protein DndD. | 0.846 |
KMZ52763.1 | KMZ55280.1 | HMPREF0980_03206 | HMPREF0980_00628 | ATP-dependent DNA helicase RecQ. | Putative helicase. | 0.925 |
KMZ52763.1 | KMZ55607.1 | HMPREF0980_03206 | HMPREF0980_00305 | ATP-dependent DNA helicase RecQ. | Putative exonuclease SbcC. | 0.816 |
KMZ52763.1 | addA | HMPREF0980_03206 | HMPREF0980_03421 | ATP-dependent DNA helicase RecQ. | ATP-dependent nuclease subunit A; ATP-dependent DNA helicase. | 0.777 |
KMZ52763.1 | polA | HMPREF0980_03206 | HMPREF0980_01084 | ATP-dependent DNA helicase RecQ. | DNA polymerase I (POL I); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.998 |
KMZ52763.1 | recA | HMPREF0980_03206 | HMPREF0980_01119 | ATP-dependent DNA helicase RecQ. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.990 |
KMZ52763.1 | sbcD | HMPREF0980_03206 | HMPREF0980_00304 | ATP-dependent DNA helicase RecQ. | Exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.985 |
KMZ53071.1 | KMZ52763.1 | HMPREF0980_02936 | HMPREF0980_03206 | Hypothetical protein. | ATP-dependent DNA helicase RecQ. | 0.803 |
KMZ53071.1 | KMZ53076.1 | HMPREF0980_02936 | HMPREF0980_02941 | Hypothetical protein. | DNA sulfur modification protein DndD. | 0.848 |
KMZ53071.1 | KMZ55280.1 | HMPREF0980_02936 | HMPREF0980_00628 | Hypothetical protein. | Putative helicase. | 0.479 |
KMZ53071.1 | polA | HMPREF0980_02936 | HMPREF0980_01084 | Hypothetical protein. | DNA polymerase I (POL I); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.972 |
KMZ53071.1 | recA | HMPREF0980_02936 | HMPREF0980_01119 | Hypothetical protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.684 |
KMZ53071.1 | sbcD | HMPREF0980_02936 | HMPREF0980_00304 | Hypothetical protein. | Exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.992 |
KMZ53076.1 | KMZ52763.1 | HMPREF0980_02941 | HMPREF0980_03206 | DNA sulfur modification protein DndD. | ATP-dependent DNA helicase RecQ. | 0.846 |
KMZ53076.1 | KMZ53071.1 | HMPREF0980_02941 | HMPREF0980_02936 | DNA sulfur modification protein DndD. | Hypothetical protein. | 0.848 |
KMZ53076.1 | KMZ55280.1 | HMPREF0980_02941 | HMPREF0980_00628 | DNA sulfur modification protein DndD. | Putative helicase. | 0.479 |
KMZ53076.1 | polA | HMPREF0980_02941 | HMPREF0980_01084 | DNA sulfur modification protein DndD. | DNA polymerase I (POL I); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.972 |
KMZ53076.1 | recA | HMPREF0980_02941 | HMPREF0980_01119 | DNA sulfur modification protein DndD. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.684 |
KMZ53076.1 | sbcD | HMPREF0980_02941 | HMPREF0980_00304 | DNA sulfur modification protein DndD. | Exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.992 |
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