Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KMZ55188.1Radical SAM domain protein. (468 aa)    
Predicted Functional Partners:
KMZ55187.1
Hypothetical protein.
 
 
   0.986
secF
Putative protein-export membrane protein SecDF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
     
 0.849
KMZ55190.1
single-stranded-DNA-specific exonuclease RecJ.
       0.671
KMZ54549.1
Orn/Lys/Arg decarboxylase family protein.
 
     0.601
KMZ55367.1
Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
  
  
 0.584
KMZ52439.1
Putative DNA replication protein DnaC.
  
     0.575
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
       0.498
KMZ55194.1
Oxygen-independent coproporphyrinogen III oxidase 2 (Coproporphyrinogenase) (Coprogen oxidase).
 
     0.497
KMZ54920.1
Hypothetical protein.
  
     0.477
KMZ53250.1
S-adenosylmethionine (SAM)-dependent methyltransferase.
  
     0.471
Your Current Organism:
Dorea sp. D27
NCBI taxonomy Id: 658665
Other names: D. sp. D27
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