Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KMZ53389.1 | KMZ54877.1 | HMPREF0980_02632 | HMPREF0980_01290 | Hypothetical protein. | Chorismate mutase/prephenate dehydratase. | 0.926 |
KMZ53389.1 | KMZ55114.1 | HMPREF0980_02632 | HMPREF0980_00792 | Hypothetical protein. | 3-deoxy-7-phosphoheptulonate synthase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP). | 0.605 |
KMZ53389.1 | aroB | HMPREF0980_02632 | HMPREF0980_01563 | Hypothetical protein. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.657 |
KMZ53389.1 | aroC | HMPREF0980_02632 | HMPREF0980_02699 | Hypothetical protein. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.767 |
KMZ53389.1 | aroK | HMPREF0980_02632 | HMPREF0980_00479 | Hypothetical protein. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.893 |
KMZ53389.1 | aroK-2 | HMPREF0980_02632 | HMPREF0980_01590 | Hypothetical protein. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.760 |
KMZ54378.1 | KMZ54877.1 | HMPREF0980_01564 | HMPREF0980_01290 | 3-deoxy-7-phosphoheptulonate synthase. | Chorismate mutase/prephenate dehydratase. | 0.998 |
KMZ54378.1 | KMZ55114.1 | HMPREF0980_01564 | HMPREF0980_00792 | 3-deoxy-7-phosphoheptulonate synthase. | 3-deoxy-7-phosphoheptulonate synthase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP). | 0.931 |
KMZ54378.1 | aroB | HMPREF0980_01564 | HMPREF0980_01563 | 3-deoxy-7-phosphoheptulonate synthase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.999 |
KMZ54378.1 | aroC | HMPREF0980_01564 | HMPREF0980_02699 | 3-deoxy-7-phosphoheptulonate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.903 |
KMZ54378.1 | aroE | HMPREF0980_01564 | HMPREF0980_02723 | 3-deoxy-7-phosphoheptulonate synthase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.655 |
KMZ54378.1 | aroK | HMPREF0980_01564 | HMPREF0980_00479 | 3-deoxy-7-phosphoheptulonate synthase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.981 |
KMZ54378.1 | aroK-2 | HMPREF0980_01564 | HMPREF0980_01590 | 3-deoxy-7-phosphoheptulonate synthase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.761 |
KMZ54729.1 | KMZ54877.1 | HMPREF0980_01141 | HMPREF0980_01290 | Methylenetetrahydrofolate reductase (NAD(P)H); Belongs to the methylenetetrahydrofolate reductase family. | Chorismate mutase/prephenate dehydratase. | 0.869 |
KMZ54729.1 | KMZ55114.1 | HMPREF0980_01141 | HMPREF0980_00792 | Methylenetetrahydrofolate reductase (NAD(P)H); Belongs to the methylenetetrahydrofolate reductase family. | 3-deoxy-7-phosphoheptulonate synthase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP). | 0.694 |
KMZ54877.1 | KMZ53389.1 | HMPREF0980_01290 | HMPREF0980_02632 | Chorismate mutase/prephenate dehydratase. | Hypothetical protein. | 0.926 |
KMZ54877.1 | KMZ54378.1 | HMPREF0980_01290 | HMPREF0980_01564 | Chorismate mutase/prephenate dehydratase. | 3-deoxy-7-phosphoheptulonate synthase. | 0.998 |
KMZ54877.1 | KMZ54729.1 | HMPREF0980_01290 | HMPREF0980_01141 | Chorismate mutase/prephenate dehydratase. | Methylenetetrahydrofolate reductase (NAD(P)H); Belongs to the methylenetetrahydrofolate reductase family. | 0.869 |
KMZ54877.1 | KMZ55081.1 | HMPREF0980_01290 | HMPREF0980_00759 | Chorismate mutase/prephenate dehydratase. | Putative aldolase. | 0.502 |
KMZ54877.1 | KMZ55114.1 | HMPREF0980_01290 | HMPREF0980_00792 | Chorismate mutase/prephenate dehydratase. | 3-deoxy-7-phosphoheptulonate synthase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP). | 0.983 |
page 1 of 4