KMZ54913.1 protein (Dorea sp. D27) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KMZ54913.1

Alkaline shock protein. (119 aa)

Predicted Functional Partners:

KMZ54915.1

0.983

KMZ54914.1

0.980

recG

0.703

rpmB

0.684

KMZ55408.1

0.608

KMZ55371.1

0.583

KMZ53732.1

0.565

KMZ54667.1

0.561

KMZ54917.1

0.558

KMZ54920.1

0.539

Your Current Organism:

Dorea sp. D27

NCBI taxonomy Id: 658665
Other names: D. sp. D27

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KMZ53732.1	KMZ54913.1	HMPREF0980_02197	HMPREF0980_00909	Putative DegV family protein.	Alkaline shock protein.	0.565
KMZ53732.1	KMZ54914.1	HMPREF0980_02197	HMPREF0980_00910	Putative DegV family protein.	DAK2 domain protein; Overlaps another CDS with the same product name.	0.975
KMZ53732.1	KMZ54915.1	HMPREF0980_02197	HMPREF0980_00911	Putative DegV family protein.	DAK2 domain protein; Overlaps another CDS with the same product name.	0.887
KMZ54667.1	KMZ54913.1	HMPREF0980_01079	HMPREF0980_00909	Putative DegV family protein.	Alkaline shock protein.	0.561
KMZ54667.1	KMZ54914.1	HMPREF0980_01079	HMPREF0980_00910	Putative DegV family protein.	DAK2 domain protein; Overlaps another CDS with the same product name.	0.986
KMZ54667.1	KMZ54915.1	HMPREF0980_01079	HMPREF0980_00911	Putative DegV family protein.	DAK2 domain protein; Overlaps another CDS with the same product name.	0.885
KMZ54913.1	KMZ53732.1	HMPREF0980_00909	HMPREF0980_02197	Alkaline shock protein.	Putative DegV family protein.	0.565
KMZ54913.1	KMZ54667.1	HMPREF0980_00909	HMPREF0980_01079	Alkaline shock protein.	Putative DegV family protein.	0.561
KMZ54913.1	KMZ54914.1	HMPREF0980_00909	HMPREF0980_00910	Alkaline shock protein.	DAK2 domain protein; Overlaps another CDS with the same product name.	0.980
KMZ54913.1	KMZ54915.1	HMPREF0980_00909	HMPREF0980_00911	Alkaline shock protein.	DAK2 domain protein; Overlaps another CDS with the same product name.	0.983
KMZ54913.1	KMZ54917.1	HMPREF0980_00909	HMPREF0980_00913	Alkaline shock protein.	Hypothetical protein.	0.558
KMZ54913.1	KMZ54920.1	HMPREF0980_00909	HMPREF0980_00916	Alkaline shock protein.	Hypothetical protein.	0.539
KMZ54913.1	KMZ55371.1	HMPREF0980_00909	HMPREF0980_00719	Alkaline shock protein.	DegV family protein.	0.583
KMZ54913.1	KMZ55408.1	HMPREF0980_00909	HMPREF0980_00509	Alkaline shock protein.	DegV family protein.	0.608
KMZ54913.1	recG	HMPREF0980_00909	HMPREF0980_00912	Alkaline shock protein.	ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.	0.703
KMZ54913.1	rpmB	HMPREF0980_00909	HMPREF0980_00908	Alkaline shock protein.	Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.684
KMZ54914.1	KMZ53732.1	HMPREF0980_00910	HMPREF0980_02197	DAK2 domain protein; Overlaps another CDS with the same product name.	Putative DegV family protein.	0.975
KMZ54914.1	KMZ54667.1	HMPREF0980_00910	HMPREF0980_01079	DAK2 domain protein; Overlaps another CDS with the same product name.	Putative DegV family protein.	0.986
KMZ54914.1	KMZ54913.1	HMPREF0980_00910	HMPREF0980_00909	DAK2 domain protein; Overlaps another CDS with the same product name.	Alkaline shock protein.	0.980
KMZ54914.1	KMZ54915.1	HMPREF0980_00910	HMPREF0980_00911	DAK2 domain protein; Overlaps another CDS with the same product name.	DAK2 domain protein; Overlaps another CDS with the same product name.	0.994