Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KMZ54733.1 | KMZ54736.1 | HMPREF0980_01145 | HMPREF0980_01148 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Hemolysin A. | 0.864 |
KMZ54733.1 | KMZ54738.1 | HMPREF0980_01145 | HMPREF0980_01150 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | 0.837 |
KMZ54733.1 | KMZ54742.1 | HMPREF0980_01145 | HMPREF0980_01154 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Alkaline shock protein. | 0.745 |
KMZ54733.1 | argR | HMPREF0980_01145 | HMPREF0980_01146 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Arginine repressor; Regulates arginine biosynthesis genes. | 0.905 |
KMZ54733.1 | dxs | HMPREF0980_01145 | HMPREF0980_01149 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.851 |
KMZ54733.1 | nadK | HMPREF0980_01145 | HMPREF0980_01147 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.893 |
KMZ54733.1 | nusB | HMPREF0980_01145 | HMPREF0980_01153 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.782 |
KMZ54733.1 | polA | HMPREF0980_01145 | HMPREF0980_01084 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | DNA polymerase I (POL I); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.805 |
KMZ54733.1 | xseA | HMPREF0980_01145 | HMPREF0980_01152 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.922 |
KMZ54733.1 | xseB | HMPREF0980_01145 | HMPREF0980_01151 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.794 |
KMZ54736.1 | KMZ54733.1 | HMPREF0980_01148 | HMPREF0980_01145 | Hemolysin A. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.864 |
KMZ54736.1 | KMZ54738.1 | HMPREF0980_01148 | HMPREF0980_01150 | Hemolysin A. | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | 0.948 |
KMZ54736.1 | KMZ54742.1 | HMPREF0980_01148 | HMPREF0980_01154 | Hemolysin A. | Alkaline shock protein. | 0.823 |
KMZ54736.1 | argR | HMPREF0980_01148 | HMPREF0980_01146 | Hemolysin A. | Arginine repressor; Regulates arginine biosynthesis genes. | 0.852 |
KMZ54736.1 | dxs | HMPREF0980_01148 | HMPREF0980_01149 | Hemolysin A. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.932 |
KMZ54736.1 | nadK | HMPREF0980_01148 | HMPREF0980_01147 | Hemolysin A. | ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.929 |
KMZ54736.1 | nusB | HMPREF0980_01148 | HMPREF0980_01153 | Hemolysin A. | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.856 |
KMZ54736.1 | xseA | HMPREF0980_01148 | HMPREF0980_01152 | Hemolysin A. | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.848 |
KMZ54736.1 | xseB | HMPREF0980_01148 | HMPREF0980_01151 | Hemolysin A. | Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.843 |
KMZ54738.1 | KMZ54733.1 | HMPREF0980_01150 | HMPREF0980_01145 | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.837 |
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