Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KMZ54497.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
KMZ54496.1
Hypothetical protein.
 
     0.956
KMZ54495.1
Hypothetical protein.
 
     0.955
KMZ54494.1
Hypothetical protein.
 
     0.950
KMZ54498.1
Putative bacterial type II secretion system protein F domain protein.
 
     0.941
KMZ54493.1
Type IV pilus retraction protein PilT.
 
     0.926
KMZ54499.1
Hypothetical protein.
 
     0.916
KMZ55745.1
Response regulator/phosphatase.
 
     0.685
KMZ54502.1
Diguanylate cyclaSe/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
     0.604
KMZ53035.1
Putative sensory box histidine kinase/response regulator.
 
     0.556
KMZ54500.1
Putative ferrichrome ABC transporter ferrichrome-binding protein.
       0.535
Your Current Organism:
Dorea sp. D27
NCBI taxonomy Id: 658665
Other names: D. sp. D27
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