Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KMZ53544.1Transcriptional regulator. (405 aa)    
Predicted Functional Partners:
KMZ53543.1
Transcriptional regulator.
  
 0.991
KMZ53542.1
TIM-barrel signal transduction protein.
  
 0.975
KMZ53541.1
TIM-barrel signal transduction protein.
  
 0.973
KMZ53540.1
Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.624
KMZ53532.1
Hypothetical protein.
  
  
 0.609
KMZ53545.1
Transcriptional regulator.
 
    
0.571
KMZ53539.1
Ribose ABC transporter, ATP-binding protein.
       0.569
KMZ54872.1
Putative Rhs family protein.
   
    0.518
KMZ55345.1
Hypothetical protein.
   
    0.504
KMZ54868.1
Hypothetical protein.
   
    0.504
Your Current Organism:
Dorea sp. D27
NCBI taxonomy Id: 658665
Other names: D. sp. D27
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