Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KMZ53593.1Hypothetical protein. (146 aa)    
Predicted Functional Partners:
KMZ53592.1
Hypothetical protein.
      
0.773
KMZ53594.1
Hypothetical protein.
       0.773
KMZ53595.1
Hypothetical protein.
       0.741
KMZ53589.1
Hypothetical protein.
       0.732
KMZ53590.1
Conserved hypothetical phage tail region protein.
       0.732
KMZ53591.1
Hypothetical protein.
       0.732
KMZ53588.1
Putative secreted protein.
       0.672
KMZ53596.1
Putative tail lysozyme.
       0.586
KMZ53597.1
Hypothetical protein.
       0.575
KMZ53598.1
Hypothetical protein.
       0.575
Your Current Organism:
Dorea sp. D27
NCBI taxonomy Id: 658665
Other names: D. sp. D27
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