Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KMZ53620.1Propanediol utilization protein PduA. (90 aa)    
Predicted Functional Partners:
KMZ53623.1
Carbon dioxide concentrating mechanism protein CcmL.
 
 
 
 0.947
KMZ53624.1
Carbon dioxide concentrating mechanism protein CcmL.
 
 
 
 0.933
KMZ55329.1
Ethanolamine utilization protein EutN.
 
 
 
 0.893
KMZ53619.1
PduT protein.
 
   
 0.875
KMZ53625.1
Carbon dioxide concentrating mechanism protein CcmL.
 
 
 
 0.873
KMZ53617.1
CoA-dependent propionaldehyde dehydrogenase.
 
   
 0.843
KMZ53618.1
PduS protein.
 
     0.702
KMZ55331.1
Bacterial microcompartments protein.
 
 
 
 0.587
KMZ53746.1
Propanediol utilization; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
 
  
 0.585
KMZ53621.1
Microcompartment protein.
 
    
0.584
Your Current Organism:
Dorea sp. D27
NCBI taxonomy Id: 658665
Other names: D. sp. D27
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