Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KMZ52677.1 | KMZ52679.1 | HMPREF0980_03247 | HMPREF0980_03249 | Peptidase, M16 family. | Hypothetical protein. | 0.475 |
KMZ52677.1 | era | HMPREF0980_03247 | HMPREF0980_03248 | Peptidase, M16 family. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.763 |
KMZ52677.1 | glyQS | HMPREF0980_03247 | HMPREF0980_03251 | Peptidase, M16 family. | glycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.628 |
KMZ52677.1 | polA | HMPREF0980_03247 | HMPREF0980_01084 | Peptidase, M16 family. | DNA polymerase I (POL I); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.544 |
KMZ52677.1 | recO | HMPREF0980_03247 | HMPREF0980_03250 | Peptidase, M16 family. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.681 |
KMZ52679.1 | KMZ52677.1 | HMPREF0980_03249 | HMPREF0980_03247 | Hypothetical protein. | Peptidase, M16 family. | 0.475 |
KMZ52679.1 | era | HMPREF0980_03249 | HMPREF0980_03248 | Hypothetical protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.601 |
KMZ52679.1 | glyQS | HMPREF0980_03249 | HMPREF0980_03251 | Hypothetical protein. | glycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.631 |
KMZ52679.1 | recO | HMPREF0980_03249 | HMPREF0980_03250 | Hypothetical protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.773 |
KMZ55023.1 | era | HMPREF0980_01019 | HMPREF0980_03248 | PhoH family protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.677 |
KMZ55023.1 | polA | HMPREF0980_01019 | HMPREF0980_01084 | PhoH family protein. | DNA polymerase I (POL I); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.558 |
KMZ55023.1 | recO | HMPREF0980_01019 | HMPREF0980_03250 | PhoH family protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.815 |
dnaX | polA | HMPREF0980_03467 | HMPREF0980_01084 | DNA polymerase III; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | DNA polymerase I (POL I); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.637 |
dnaX | recO | HMPREF0980_03467 | HMPREF0980_03250 | DNA polymerase III; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.663 |
dnaX | recR | HMPREF0980_03467 | HMPREF0980_03465 | DNA polymerase III; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.953 |
dnaX | topA | HMPREF0980_03467 | HMPREF0980_00467 | DNA polymerase III; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.488 |
era | KMZ52677.1 | HMPREF0980_03248 | HMPREF0980_03247 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Peptidase, M16 family. | 0.763 |
era | KMZ52679.1 | HMPREF0980_03248 | HMPREF0980_03249 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Hypothetical protein. | 0.601 |
era | KMZ55023.1 | HMPREF0980_03248 | HMPREF0980_01019 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | PhoH family protein. | 0.677 |
era | glyQS | HMPREF0980_03248 | HMPREF0980_03251 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | glycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.720 |
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