Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KMZ52615.1Hypothetical protein. (125 aa)    
Predicted Functional Partners:
KMZ52614.1
Hypothetical protein.
 
     0.914
KMZ52669.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
  0.794
KMZ52616.1
Hypothetical protein.
       0.776
KMZ55264.1
Hypothetical protein.
  
     0.627
KMZ53369.1
Transcriptional regulator.
  
     0.621
KMZ55571.1
ABC-2 type transporter superfamily.
  
     0.607
nadE
Glutamine-dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.606
KMZ52600.1
Putative Tat (twin-arginine translocation) pathway signal sequence.
  
     0.564
KMZ52617.1
LytTr DNA-binding domain protein.
 
     0.557
KMZ55789.1
Hypothetical protein.
  
     0.529
Your Current Organism:
Dorea sp. D27
NCBI taxonomy Id: 658665
Other names: D. sp. D27
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