Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KMZ52472.1Hypothetical protein. (228 aa)    
Predicted Functional Partners:
KMZ55551.1
Putative RecA protein.
  
  
 0.682
KMZ55087.1
Hypothetical protein.
  
     0.673
KMZ53338.1
Putative membrane-fusion protein.
  
     0.612
KMZ54931.1
Hypothetical protein.
  
     0.542
KMZ53717.1
Putative transcriptional regulator, ArsR family.
  
     0.523
KMZ53983.1
Bacterial trigger factor protein.
  
     0.496
KMZ52346.1
Putative phage putative head morphogenesis protein, SPP1 gp7 family.
  
     0.478
KMZ52806.1
Hypothetical protein.
  
     0.472
KMZ53050.1
Hypothetical protein.
  
     0.471
KMZ54536.1
Type IV prepilin leader peptidase family protein.
  
     0.465
Your Current Organism:
Dorea sp. D27
NCBI taxonomy Id: 658665
Other names: D. sp. D27
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